Clonalframeml was created by xavier didelot and daniel wilson. Clonalframeml was created by xavier didelot and daniel wilson ClonalFrameML: 整合细菌全基因组重组推理工具项目介绍ClonalFrameML是由Xavier Didelot和Daniel Wilson开发的一款高效细菌全基因组重组推断软件包。 它设计用于分析细菌微进化，特别是通过多位点序列数据来识别样本间的克隆关系，并估算同源重组事件在染色体上的位置。
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Here we present clonalframeml, which uses maximum likelihood inference to simultaneously detect recombination in bacterial genomes and account for it in phylogenetic reconstruction.
以上就是对ClonalFrameML项目的基本结构、启动方法以及配置方式的简单介绍。 更深入的使用细节，包括具体的参数使用和数据分析流程，应当参考正式的用户指南和项目文档。
In 2015 a new separate software was released called clonalframeml which is designed to run on large whole genomes datasets For more information about clonalframeml, see the separate clonalframeml website. This document provides a technical overview of clonalframeml, a software package for efficient maximum likelihood inference of recombination in bacterial genomes.
